発表論文　PUBLICATIONS

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2024

  1.  Nakayama T, Nomura M, Yabuki A, Shiba K, Inaba K, Inagaki Y. Convergent reductive evolution of cyanobacteria in symbiosis with Dinophysiales dinoflagellates. Sci Rep. 2024 Jun 4;14(1):12774. doi: 10.1038/s41598-024-63502-0.
  2. Kinoshita-Terauchi N, Shiba K, Umezawa T, Inaba K. Distinct regulation of two flagella by calcium during chemotaxis of male gametes in the brown alga Mutimo cylindricus (Cutleriaceae, Tilopteridales). J Phycol. 2024 Apr;60(2):409-417. doi: 10.1111/jpy.13422.
  3. Iwamoto H, Oiwa K, Shiba K, Inaba K. X-ray diffraction recording from a small amount of fibrous protein materials oriented by a micro shear-flow cell. Biophys Physicobiol. 2024 Apr 20;21(2):e210014. doi: 10.2142/biophysico.bppb-v21.0014. eCollection 2024.

2023

  1. Shiba K, Inaba K. The role of soluble adenylyl cyclase in the regulation of flagellar motility in ascidian sperm. Biomolecules 2023 Oct 30;13(11), 1594. doi:  org/10.3390/biom13111594.
  2. Shiba K. Regulatory mechanisms for sperm chemotaxis and flagellar motility. Genesis 2023 Sep 12:e23549. doi: 10.1002/dvg.23549.
  3. 長谷川 雅俊, 稲葉 一男, 永倉 靖大, 野田 浩之, 川合 範明．キンメダイ種苗生産のための冷蔵精子保存液の開発．日本水産学会誌．2023 年 89 巻 3 号 p. 236-243. doi.org/10.2331/suisan.22-00062
  4. Morita M, Kitanobo S, Ohki S, Shiba K, Inaba K. Positive selection on ADAM10 builds species recognition in the synchronous spawning coral Acropora. Front Cell Dev Biol. 2023 Apr 20;11:1171495. doi: 10.3389/fcell.2023.1171495.
  5. Shiba K, Baba SA, Fujiwara E, Inaba K. Calaxin is required for asymmetric bend initiation and propagation in sperm flagella. Front Cell Dev Biol. 2023 Mar 16;11:1136404. doi: 10.3389/fcell.2023.1136404.
  6. Sensui N, Itoh Y, Okura N, Shiba K, Baba SA, Inaba K, Yoshida M. Spawning-Induced pH Increase Activates Sperm Attraction and Fertilization Abilities in Eggs of the Ascidian, Phallusia philippinensis and Ciona intestinalis. Int J Mol Sci. 2023 Jan 31;24(3):2666. doi: 10.3390/ijms24032666. 

2022

 

  1. Asai M, Miyazawa H, Yanase R, Inaba K,  Nakano H. A new species of Acoela possessing a middorsal appendage with a possible sensory function. Zoolog Sci. 39(1). January 2022.
  2. Nakano H, Isowa Y, Inaba K. JAMBIO and its coastal organism joint surveys: Network of marine stations explores Japanese coastal biota. Zoolog Sci. 39(1). February 2022.
  3. Shiba K, Inaba K. The roles of two CNG channels in the regulation of ascidian sperm chemotaxis. Int J Mol Sci. 23(3): 1648. January 2022.
  4. Sugiura K, Shiba K, Inaba K, Matsumoto M. Morphological differences in tardigrade spermatozoa induce variation in gamete motility. BMC Zoology, 7(1): 8. January 2022.
  5. Shibata D, Morita M, Sato Y, Shiba K, Kitanobo S, Yokoya R, Inaba K. Axonemal Growth and Alignment During Paraspermatogenesis in the Marine Gastropod Strombus luhuanus. Front. Cell Dev. Biol., 10:905748, June 2022. doi: 10.3389/fcell.2022.905748
  6. Hayakawa E, Guzman C, Horiguchi O, Kawano C, Shiraishi A, Mohri K, Lin MF, Nakamura R, Nakamura R, Kawai E, Komoto S, Jokura K, Shiba K, Shigenobu S, Satake H, Inaba K, Watanabe H. Mass spectrometry of short peptides reveals common features of metazoan peptidergic neurons. Nat Ecol Evol. 2022 Aug 8.
  7. Jokura K, Sato Y, Shiba K, Inaba K. Two distinct compartments of a ctenophore comb plate provide structural and functional integrity for the motility of giant multicilia. Curr Biol. 2022 Oct 19:S0960-9822(22)01603-7.
  8. Ito T, Morita M, Okuno S, Inaba K, Shiba K, Munehara H, Koya Y, Homma M, Awata S. Fertilization modes and the evolution of sperm characteristics in marine fishes: Paired comparisons of externally and internally fertilizing species. Ecology and Evolution. 2022 Dec 4.

 

2021

 

  1. Kutomi O, Yamamoto R, Hirose K, Mizuno K, Nakagiri Y, Imai H, Noga A, Obbineni JM, Zimmermann N, Nakajima M, Shibata D, Shibata M, Shiba K, Kita M, Kigoshi H, Tanaka Y, Yamasaki Y, Asahina Y, Song C, Nomura M, Nomura M, Nakajima A, Nakachi M, Yamada L, Nakazawa S, Sawada H, Murata K, Mitsuoka K, Ishikawa T, Wakabayashi KI, Kon T, Inaba K. A dynein-associated photoreceptor protein prevents ciliary acclimation to blue light.
     Sci Adv. 2021 Feb 26;7(9):eabf3621. doi: 10.1126/sciadv.abf3621. Print 2021 Feb.
  2. Kinoshita-Terauchi N, Bellgrove A, Shiba K, Inaba K. Flagellar motility during sperm chemotaxis and phototaxis in fucalean algae. European Journal of Phycology 2021 Jan; 56:1, 85-93. doi:10.1080/09670262.2020.1767307

 

2020

 

  1. Konno A, Inaba K. Region-Specific Loss of Two-Headed Ciliary Dyneins in Ascidian Endostyle. Zoolog Sci. 2020 Dec;37(6):512-518.  doi: 10.2108/zs200095.
  2. Jokura K,  Inaba K. Structural diversity and distribution of cilia in the apical sense organ of the ctenophore Bolinopsis mikado. Cytoskeleton (Hoboken) 2020 Oct 26. doi: 10.1002/cm.21640. Online ahead of print.
  3. Cattano C, Agostini S, Harvey BP, Wada S, Quattrocchi F, Turco G, Inaba K, Hall-Spencer JM, Milazzo M. Changes in fish communities due to benthic habitat shifts under ocean acidification conditions. Science of The Total Environment, 2020 Jul 10;725, p.138501.doi:10.1016/j.scitotenv.2020.138501.
  4. Wang Y, Fan X, Gao G, Beardall J, Inaba K, Hall-Spencer JM, Xu D, Zhang X, Han W, McMinn A, Ye N. Decreased motility of flagellated microalgae long-term acclimated to CO2-induced acidified waters. Nature Climate Change 2020 Jun 1;10(6):561–567.doi:10.1038/s41558-020-0776-2.
  5. Kazuo Inaba, Jason M. Hall-Spencer (editors). Japanese marine life: a practical training guide in marine biology. Springer Singapore, 2020 May, 367 pages, ISBN:9811513252, 9789811513251
  6. Miyata M, Robinson RC, Uyeda TQP, Fukumori Y, Fukushima SI, Haruta S, Homma M, Inaba K, Ito M, Kaito C, Kato K, Kenri T, Kinosita Y, Kojima S, Minamino T, Mori H, Nakamura S, Nakane D, Nakayama K, Nishiyama M, Shibata S, Shimabukuro K, Tamakoshi M, Taoka A, Tashiro Y, Tulum I, Wada H, Wakabayashi KI. Tree of motility - A proposed history of motility systems in the tree of life. Genes Cells. 2020 Jan;25(1):6-21. doi: 10.1111/gtc.12737. Review.
  7. Morohoshi A, Miyata H, Shimada K, Nozawa K, Matsumura T, Yanase R, Shiba K, Inaba K, Ikawa M. Nexin-Dynein regulatory complex component DRC7 but not FBXL13 is required for sperm flagellum formation and male fertility in mice. PLoS Genet. 2020 Jan 21;16(1):e1008585. doi: 10.1371/journal.pgen.1008585. eCollection 2020 Jan.

 

2019

 

  1. Jokura K, Shibata D, Yamaguchi K, Shiba K, Makino Y, Shigenobu S, Inaba K. CTENO64 Is Required for Coordinated Paddling of Ciliary Comb Plate in Ctenophores. Curr Biol. 2019 Oct 21; 29(20):3510-3516.e4. doi: 10.1016/j.cub.2019.08.059. Epub 2019 Oct 10.
  2. Sasaki K, Shiba K, Nakamura A, Kawano N, Satouh Y, Yamaguchi H, Morikawa M, Shibata D, Yanase R, Jokura K, Nomura M, Miyado M, Takada S, Ueno H, Nonaka S, Baba T, Ikawa M, Kikkawa M, Miyado K, Inaba K. Calaxin is required for cilia-driven determination of vertebrate laterality. Commun Biol. 2019 Jun 20;2:226. doi: 10.1038/s42003-019-0462-y. eCollection 2019.
  3. Nakayama T, Nomura M, Takano Y, Tanifuji G, Shiba K, Inaba K, Inagaki Y, Kawata M. Single-cell genomics unveiled a cryptic cyanobacterial lineage with a worldwide distribution hidden by a dinoflagellate host. Proc Natl Acad Sci U S A. 2019 Jun 24. pii: 201902538. doi: 10.1073/pnas.1902538116. [Epub ahead of print]
  4. Inaba K. Regulatory Mechanism of Axonemal Dynein. In: Handbook of Dynein (Second Edition) (K Hirose, Ed), CRC Press, 2019 May; pp.375-410, ISBN: 9789814800013.
  5. Itou T, Kanno M, Suyama Y, Inaba K, Aoki MN. Opening the black box: microspatial patterns of zoospore dispersal, parentage, and selfing in the kelp Ecklonia cava as revealed by microsatellite markers. Journal of Applied Phycology, First Online: 06 April 2019. doi: 10.1007/s10811-019-01790-0
  6. Kinoshita-Terauchi N, Shiba K, Umezawa T, Matsuda F, Motomura T, Inaba K. A brown algal sex pheromone reverses the sign of phototaxis by cAMP/Ca2+-dependent signaling in the male gametes of Mutimo cylindricus (Cutleriaceae). J Photochem Photobiol B. 2019 Mar;192:113-123. doi: 10.1016/j.jphotobiol.2019.01.010. Epub 2019 Jan 29.

  7. Nomura M, Atsuji K, Hirose K, Shiba K, Yanase R, Nakayama T, Ishida KI, Inaba K. Microtubule stabilizer reveals requirement of Ca2+-dependent conformational changes of microtubules for rapid coiling of haptonema in haptophyte algae. Biol Open. 2019 Feb 11;8(2). pii: bio036590. doi: 10.1242/bio.036590.

 

2018

 

  1. Yoshida K, Shiba K, Sakamoto A, Ikenaga J, Matsunaga S, Inaba K, Yoshida M. Ca2+ efflux via plasma membrane Ca2+-ATPase mediates chemotaxis in ascidian sperm. Sci Rep. 2018 Nov 9;8(1):16622. doi: 10.1038/s41598-018-35013-2.
  2. Harvey BP, Agostini S, Wada S, Inaba K, Hall-Spencer JM. Dissolution: The Achilles’ Heel of the Triton Shell in an Acidifying Ocean. Front. Mar. Sci. 2018 Oct 12; 5:371. doi: 10.3389/fmars.2018.00371
  3. Mizotani Y, Suzuki M, Hotta K, Watanabe H, Shiba K, Inaba K, Tashiro E, Oka K, Imoto M. 14-3-3εa directs the pulsatile transport of basal factors toward the apical domain for lumen growth in tubulogenesis. Proc Natl Acad Sci U S A. 2018 Sep 18;115(38):E8873-E8881. doi: 10.1073/pnas.1808756115. Epub 2018 Aug 29.
  4. Momose T, De Cian A, Shiba K, Inaba K, Giovannangeli C, Concordet JP. High doses of CRISPR/Cas9 ribonucleoprotein efficiently induce gene knockout with low mosaicism in the hydrozoan Clytia hemisphaerica through microhomology-mediated deletion. Sci Rep. 2018 Aug 6;8(1):11734. doi: 10.1038/s41598-018-30188-0.
  5. Kamiya R, Shiba K, Inaba K, Kato-Minoura T. Release of sticky glycoproteins from Chlamydomonas flagella during microsphere translocation on the surface membrane. Zoolog Sci. 2018 Aug;35(4):299-305. doi: 10.2108/zs180025.
  6. Agostini S, Harvey BP, Wada S, Kon K, Milazzo M, Inaba K, Hall-Spencer JM. Ocean acidification drives community shifts towards simplified non-calcified habitats in a subtropical-temperate transition zone. Sci Rep. 2018 Jul 27;8(1):11354. doi: 10.1038/s41598-018-29251-7.
  7. Hill RW, Armstrong EJ, Inaba K, Morita M, Tresguerres M, Stillman JH, Roa JN, Kwan GT. Acid secretion by the boring organ of the burrowing giant clam, Tridacna crocea. Biol Lett. 2018 Jun;14(6). pii: 20180047. doi: 10.1098/rsbl.2018.0047.
  8. Inaba K, Shiba K. Microscopic analysis of sperm movement: links to mechanisms and protein components. Microscopy (Oxf). 2018 Jun 1;67(3):144-155. doi: 10.1093/jmicro/dfy021.
  9. Ugwu SI, Shiba K, Inaba K, Morita M. A Unique Seminal Plasma Protein, Zona Pellucida 3-Like Protein, has Ca2+ -Dependent Sperm Agglutination Activity. Zoolog Sci. 2018 Apr;35(2):161-171. doi: 10.2108/zs170150.
  10. Morita N, Inaba K, Saito Y. Post-Embryonic Development and Genital-Complex Formation in Three Species of Polyclad Flatworms. Zoolog Sci. 2018 Feb;35(1):28-38. doi: 10.2108/zs170114.
  11. Shojima T, Hou F, Takahashi Y, Matsumura Y, Okai M, Nakamura A, Mizuno K, Inaba K, Kojima M, Miyakawa T, Tanokura M. Crystal structure of a Ca2+-dependent regulator of flagellar motility reveals the open-closed structural transition. Sci Rep. 2018 Jan 31;8(1):2014. doi: 10.1038/s41598-018-19898-7.

 

2017

 

  1. Inaba K. Biochemical purification of axonemal and cytoplasmic dyneins. In: Dyneins - Dynein Mechanics, Dysfunction, and Disease (2nd Edition) (SM King, Ed), pp. 89-112, Nov 2017. eBook ISBN: 9780128097014.
  2. Mizuno K, Shiba K, Yaguchi J, Shibata D, Yaguchi S, Prulière G, Chenevert J, Inaba K. Calaxin establishes basal body orientation and coordinates movement of monocilia in sea urchin embryos. Sci Rep. 2017 Sep 7;7(1):10751. doi: 10.1038/s41598-017-10822-z.
  3. Yamamoto R, Obbineni JM, Alford LM, Ide T, Owa M, Hwang J, Kon T, Inaba K, James N, King SM, Ishikawa T, Sale WS, Dutcher SK. Chlamydomonas DYX1C1/PF23 is essential for axonemal assembly and proper morphology of inner dynein arms. PLoS Genet. 2017 Sep 11;13(9):e1006996. doi: 10.1371/journal.pgen.1006996. eCollection 2017 Sep.
  4. L. Valdés (eds), M Cargo, H. Oksfeldt, HE Garcia, L Horn, K Inaba, L Inniss, K Isensee, B Kelly, YH Lee, J Mees, G Reed, S Pae, L Pikula, P Pissierssens, L Raymond, M Scraper, A Simcock, AH Trios. UNESCO. Global Ocean Science Report—The current status of ocean science around the world. UNESCO Publishing, Paris, ISBN 978-92-3-100226-7 (July 2017).
  5. Shiba K, Inaba K. Inverse relationship of Ca2+-dependent flagellar response between animal sperm and prasinophyte algae. J Plant Res. 2017 May;130(3):465-473. doi: 10.1007/s10265-017-0931-7.

 

2016

 

  1. Konno A, Ikegami K, Konishi Y, Yang HJ, Abe M, Yamazaki M, Sakimura K, Yao I, Shiba K, Inaba K, Setou M. Doublet 7 shortening, doublet 5-preferential poly-Glu reduction, and beating stall of sperm flagella in Ttll9-/- mice. J Cell Sci. 2016 Jul 15;129(14):2757-66. doi: 10.1242/jcs.185983.
  2. Yaguchi J, Takeda N, Inaba K, Yaguchi S. Cooperative Wnt-Nodal Signals Regulate the Patterning of Anterior Neuroectoderm. PLoS Genet. 2016 Apr 21;12(4):e1006001. doi: 10.1371/journal.pgen.1006001. eCollection 2016 Apr.
  3. Kinoshita N, Shiba K, Inaba K, Fu G, Nagasato C and Motomura T. Flagellar waveforms of gametes in the brown alga Ectocarpus siliculosus. Eur J Phycol, 2016 April (2015 Dec, online): 51(2): 139-148.
    doi: 10.1080/09670262.2015.1109144.

 

2015

 

  1. Matsuzaki M, Mizushima S, Hiyama G, Hirohashi N, Shiba K, Inaba K, Suzuki T, Dohra H, Ohnishi T, Sato Y, Kohsaka T, Ichikawa Y, Atsumi Y, Yoshimura T, Sasanami T. Lactic acid is a sperm motility inactivation factor in the sperm storage tubules. Sci Rep. 2015 Dec 1;5:17643. doi: 10.1038/srep17643.
  2. Inaba K. Japanese marine biological stations: preface to the special issue. Reg Stud Mar Sci, 2015 Nov; 2:154–157. doi:10.1016/j.rsma.2015.09.005
  3. Agostini S, Wada S, Kon K, Omori A, Kohtsuka H, Fujimura H, Tsuchiya Y, Sato T, Shinagawa H, Yamada Y, Inaba K. Geochemistry of two shallow CO2 seeps in Shikine Island (Japan) and their potential for ocean acidification research. Reg Stud Mar Sci, 2015 Nov; 2:45-53. doi:10.1016/j.rsma.2015.07.004
  4. Cosson J, Prokopchuk G, Inaba K. The flagellar mechanics of spermatozoa and its regulation. In: Flagellar Mechanics and Sperm Guidance (Cosson J, Ed), Bentham Science Publishers, 2015 Nov; pp.3-134. doi: 10.2174/97816810812811150101
  5. Yoshida M, Inaba K. Sperm chemotaxis in urochordates. In: Flagellar Mechanics and Sperm Guidance (Cosson J, Ed), Bentham Science Publishers, 2015 Nov; pp.183-207. doi: 10.2174/97816810812811150101
  6. Inaba K, Kutomi O, Shiba K, Cosson J. Sperm guidance: comparison with motility regulation in bikont species. In: Flagellar Mechanics and Sperm Guidance (Cosson J, Ed), Bentham Science Publishers, 2015 Nov; pp.349-389. doi: 10.2174/97816810812811150101
  7. Miyata H, Satouh Y, Mashiko D, Muto M, Nozawa K, Shiba K, Fujihara Y, Isotani A, Inaba K, Ikawa M. Sperm calcineurin inhibition prevents mouse fertility with implications for male contraceptive. Science. 2015 Oct 23;350(6259):442-5. doi: 10.1126/science.aad0836.
  8. Inaba K, Mizuno K. Sperm Dysfunction and Ciliopathy. Reprod Med Biol, 2015 Oct 14; online. doi: 10.1007/s12522-015-0225-5
  9. Konno A, Shiba K, Cai C, Inaba K. Branchial cilia and sperm flagella recruit distinct axonemal components. PLoS One. 2015 May 11;10(5):e0126005. doi: 10.1371/journal.pone.0126005.
  10. Inaba K. Calcium sensors of ciliary outer arm dynein: functions and phylogenetic considerations for eukaryotic evolution. Cilia. 2015 Apr 30;4:6. doi: 10.1186/s13630-015-0015-z.
  11. Miyashiro D, Shiba K, Miyashita T, Baba SA, Yoshida M, Kamimura S. Chemotactic response with a constant delay-time mechanism in Ciona spermatozoa revealed by a high time resolution analysis of flagellar motility. Biol Open. 2015 Jan 8;4(2):109-18. doi: 10.1242/bio.20137351.
  12. Satou Y, Hirayama K, Mita K, Fujie M, Chiba S, Yoshida R, Endo T, Sasakura Y, Inaba K, Satoh N. Sustained heterozygosity across a self-incompatibility locus in an inbred ascidian. Mol Biol Evol. 2015 Jan;32(1):81-90. doi: 10.1093/molbev/msu268.



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